Publication

Contents

1. Our publications
2. Publications that cite ViBrism DB, our publications or our data.

1. Our publications

Morita M, Shimokawa K, Nishimura M, Nakamura S, Tsujimura Y, Takemoto S, Tawara T, Yokota Y, Wemler S, Miyamoto D, Ikeno H, Sato S, Furuichi T, Kobayashi N, Okumura Y, Yamaguchi Y, Okamura-Oho Y*. "ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks" Nucleic Acids Research, 47, D859-D866 (2019)
doi:10.1093/nar/gky951
web access: https://doi.org/10.1093/nar/gky951

Okamura-Oho Y*, Shimokawa K, Nishimura M, Takemoto S, Sato A, Furuichi T, Yokota H. “Integration of Expression Maps and Co-Expression Networks Compassing Novel Gene Functions in the Brain” Sci. Rep. 4 : 6969 (2014)
doi:10.1038/srep06969
web access: http://www.nature.com/articles/srep06969

Okamura-Oho Y*, Shimokawa K, Takemoto S, Hirakiyama A, Nakamura S, Tsujimura Y, Nishimura M, Kasukawa T, Masumoto K, Nikaido I, Shigeyoshi Y, Ueda H, Song G, Gee J, Himeno R, Yokota H. " Transcriptome tomography for brain analysis in the web-accessible anatomical space" PLOS ONE7(9): e45373 (2012)
doi: 10.1371/journal.pone.0045373
web access: http://dx.plos.org/10.1371/journal.pone.0045373

Yokota, H., Nakamura, S., Kawaguchi, R., Makinouchi, A., Yabe, H., & Higuchi, T*.
Destructed Imaging of Biological Sample Using a 3 Dimensional Internal Structure Microscope. Med. Imag. Tech. 20, 660-665 (2002).

*: correspondence

2. Publications that cite ViBrism DB, our publications or our data.

Crosetto, N., Bienko, M., Van Oudenaarden, A. “Spatially resolved transcriptomics and beyond” Nature Reviews Genetics 2014 16(1): 57.

doi:10.1038/nrg3832

Sergejeva M, Papp E, Bakker R, Gaudnek M, Okamura-Oho Y, Boline J, Bjaalie J, Hess A “Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates” Journal of Neuroscience Methods 2015 240: 161. doi:10.1016/j.jneumeth.2014.11.005